| Basic Information | |
|---|---|
| Taxon OID | 3300023179 Open in IMG/M |
| Scaffold ID | Ga0214923_10005980 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13869 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (18.18%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002303 | Metagenome / Metatranscriptome | 573 | Y |
| F003542 | Metagenome / Metatranscriptome | 480 | Y |
| F005090 | Metagenome / Metatranscriptome | 412 | N |
| F005630 | Metagenome / Metatranscriptome | 394 | N |
| F007751 | Metagenome / Metatranscriptome | 345 | Y |
| F010836 | Metagenome / Metatranscriptome | 298 | Y |
| F011075 | Metagenome / Metatranscriptome | 295 | Y |
| F011392 | Metagenome / Metatranscriptome | 291 | Y |
| F070108 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214923_1000598010 | F070108 | N/A | MVFSLEEQMDIELILTEASAYGMSAEVELYAQKYLSEGCTPVEAYQHAYNEWIK |
| Ga0214923_1000598013 | F002303 | N/A | MDIREQCYERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIYLLAMCKANCFLNEF |
| Ga0214923_1000598015 | F007751 | N/A | MNQILELKSVIGKDVSENRSPTCRARLVSVGKSNCIFQSVPSLYGPPPKPEFVGVKYKVPNWIAWNSFFF |
| Ga0214923_1000598016 | F010836 | N/A | MSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELKDNSDYVDYGKTDPNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKLKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL |
| Ga0214923_1000598018 | F011075 | N/A | MRSFETHLGIIVGSHLNDAMIEISINPKLAKQRMKFVKALTFFNEDLTKGVTDEYCSWLWDELFENQRWGGPYVKGTDYETK |
| Ga0214923_100059802 | F005630 | N/A | MSKNLYEVDGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGINSIDELYDFVIN |
| Ga0214923_100059803 | F005090 | N/A | MKKKMKFVWCGVNFELPAECLRTTDYWGKKLDNPYIYIGRKECPAIAKQFMKAKYPKLLVWGSSQTFANGNSASVDVCNADGSDLDMGSKEWNEINSFIRQMCGGKYDGWSESYEYGEPGKTDNGTKLDFGTKYLSVNNKAPFGTWPDVVRMLKGMMAGEYVWGPLSLEKAIDKVRDYKVTEPTIKKALELI |
| Ga0214923_100059804 | F011392 | N/A | MNLSIKELNELIYSLGITASKGIFVNKELNASLIDKLYSELNSKIAEEAIDEEVESDTYYVSNEEADEDAKQRDYSAFNDYASTLKQDAQRYEASHMTTSFPIVDPFTSVSEDYDNHLSKLKQRGYITQALLDYVDKKGAVSHGELETYYKIITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYSDAKYVIKVANPSNWVVSDYDYKTFNEAPYGE |
| Ga0214923_100059805 | F003542 | N/A | MNTMLKNVKNPVQFDYDLFDSKIGYDSVNKKYLIRVYDYLVDSIQNDVKPTWTSIMVKMLGDNPNRCNPSSYYSSVRRCLKEIDVCKFDSVKRCMVKGRNWDRFVSDESWNWFIMRTGSCEYSTIIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |