NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000306

Scaffold Ga0214923_10000306


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74614
Total Scaffold Genes109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (19.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016038Metagenome / Metatranscriptome250Y
F052416Metagenome / Metatranscriptome142Y
F052418Metagenome142Y
F065460Metagenome / Metatranscriptome127Y
F096706Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000030612F052416N/AMDFITPKPIVSPISGQTVRPVLKTYIREGKEIVEAEYIDPASGAFIRKGIVSVRDLKSKDKKD
Ga0214923_1000030662F065460N/AMKFNENYDQIMEGFGYLKTVKKEFYPKNFKLSEEFVKTFKSEFKRLVDEGIHPRIALARINKALMFHSR
Ga0214923_1000030670F016038N/AMPLDIDTLPTQKSLIDLSELPKNSFNSVFFGYNLKTVLDDVLLVKYVDETEDGSSIVRNGIVVPINADTRAWRIGEVILCGPTAKHVNKGDYVCFPNNLGVPVANLDIDGYGTLKKGLFLNEQRIFGICSLRKDDESVASHIKKTSSKQRGRN
Ga0214923_1000030671F052418N/AMKASLATLKKLLLNNVAEIKFLRKRPRPGLPPTRRMLCTNSLPLLNSPEGRIALNYRRAINRVKYDPDSKNILITWDILMQDYRCINMAACDLVSVIPVQQFWKFFNEKLALMPANEKTRFMNS
Ga0214923_1000030696F096706N/AMTKLYSAVLAGKNTINVFDVKKGIKTYSLNLGSVEIVNGPVVTQDKMTVVTKDSSGKMRGKVYSLPKGILTYSFQVN
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