NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000173

Scaffold Ga0214923_10000173


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000173 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97702
Total Scaffold Genes179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (27.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046819Metagenome / Metatranscriptome150N
F055399Metagenome / Metatranscriptome138Y
F065460Metagenome / Metatranscriptome127Y
F088162Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000017314F055399GAGMKSEQEIQLQVKRIMGKWYSESVFSKNKYIEASYFFFWKWYYKCTSGLYYKCKYALQRLFRGYDDLDKWNAAWYIARKSIPVLKAMRDKFHGTSLKWHREDRFGNLIELAQDEVFVEGEEPASFTEDEWRAILDDIIFAFQWQIDFDSIDGTVGEREYRLGMKRQKRGLKLFAIYFNCLW
Ga0214923_10000173175F065460N/AVTKFNQAFEKINENFKSIKWIRREFYPKNFNLSEEFVVAFKKEYKRLIDEGLEPKKALVKLNKALLFHTK
Ga0214923_1000017354F088162N/AMMKKQTNKEYSLLVYMNAQHKYTDSETQLETLCKEKFNGRNVGGGTNLSNGKRDQQFVFNKLTDAKAFLKHPFTKAVTLKSFDLVEVD
Ga0214923_1000017391F046819GGAGGVNTFQPYTQTNVVDFYKELVKRWADDQLDQLHEYPITDRKNALARLLDSSLDVFRDDITEEIRKRNLSFLVD
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