NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000056

Scaffold Ga0214923_10000056


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)149053
Total Scaffold Genes133 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (30.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029103Metagenome189Y
F037070Metagenome168Y
F048777Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_10000056113F048777N/AMAVPPWTYLAVIVLSLLSIYYFTYLKDQQGFKDKVVLDTSKDTTMYPYTTSPINSLDQYELEAVFDNEGDRELSKQQINQMTRRYPLDWTNYPPNASKFQSEQAKYIEGFSSDASAKNLEEPYKAIGDGNLVPPDTLEIEKQEREILQTYQPKNANDLTTYDIDDAQTLVEKIYKPKGLIPKVMRREGNVFEVVGTTEINAKIEYEDELPHTPASSWPNQAAGEATIHVPATATETAAGLDPFYEPTTATRSDRSDYQKWTPGLERMFAPTYPVTDWVGQPK
Ga0214923_1000005676F029103AGTAGMPVPVLSNLMRAAVEGYTNPGGTEAYKPPPAYADALASLLAFFLALALVSFIGLWLWNNSVVPLFEFARPAKSIFQILGLMIFVSLIHA
Ga0214923_1000005695F037070N/AMSSAIDPTNVFDPLGTVRQQGSLAGTTPAQSSTTTPFFPAVCLSTHWDPTRIYARTVPTQLVSLPVDFRPYTKVCLDYRTSAPEQAAPEVPDNLVFPGGGDQYPPTRYINNIDRESLLRRLDRPLGTCDPDQYYPPKSGDMYVDGMLVPRTPKLNSRFVDELSMPQALLRNGPYDCRAQADKINWERSPRLFNNTTKQDRYTAPPSVEKPRQNIWATQLRCTDTPLSTHKTANGQRAWGPGSAAGCQLKENF
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