NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10320075

Scaffold Ga0214921_10320075


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10320075 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006744Metagenome / Metatranscriptome365Y
F017995Metagenome / Metatranscriptome237Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_103200753F006744AGGMNLDEFKKHVLETRQASKAEALSVLSATITTQPNERGNLK
Ga0214921_103200754F017995GGAMSKMKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCNCIADVADELTVDWVNE
Ga0214921_103200755F076101N/AMYKITLSYDGNPPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKNFYRSGMVAVK

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