NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10079037

Scaffold Ga0214921_10079037


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10079037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2616
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006885Metagenome / Metatranscriptome362Y
F018928Metagenome / Metatranscriptome232Y
F028423Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100790371F028423AGTAGGMENLEKNELIQLVGFYKQKLSDVELESLKLQLEVNKLNSMVLSLSQEPVKKTK
Ga0214921_100790372F006885N/AMEYLLIIGLTLLLYWSIIKISNKRRMIFLNKNKYRQSSIYEMVKDVVPKQRFDKPKVITQSQRHIQKNMLRVVIADGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELDRMLSILDDLKQGVGPNDSSGTGNKGI
Ga0214921_100790374F018928N/AMIIRSLNTMEKIINKNKNLLWRGWDVVDLKESDTAKTSPMGIRVKDKWYLHRIYKPGRNGWDIPNKYKD
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