NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10043725

Scaffold Ga0214921_10043725


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10043725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4080
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002044Metagenome / Metatranscriptome599Y
F002162Metagenome / Metatranscriptome588Y
F007469Metagenome / Metatranscriptome350Y
F007522Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004372510F002044N/AMANTRKPIKRKKINRRVVRQSPEPLNKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD
Ga0214921_100437254F002162GGAMPNYEYECDGEGLSIVLDLPMEHEIPRCQVCGANLRRVYKAVPAIFKGTGWAGKK
Ga0214921_100437255F007469AGGAGGMGYVEIIDGSGLMATIENDAIKVEPTTVHCDLCNDDRLLHEGDLLRCYSCHSINRIP
Ga0214921_100437258F007522AGGMYSQIVCGYVGSDMTLKEAGLWWVATMVAIIWAMGIHENAKQTHYWRGRKDGWDMHRRMIENKNDANKY
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