NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10043383

Scaffold Ga0214921_10043383


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10043383 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4104
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F006885Metagenome / Metatranscriptome362Y
F018928Metagenome / Metatranscriptome232Y
F028423Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100433831F003688GGAMGQKVMYTNEMRRAVHSIIPPKGFGIDIIDNEHFLTVKLDEYKFLKMLHDEKIEALKYVVQIKKALEING
Ga0214921_100433836F018928AGGAGMIIRSLNTMEKIINKNKNLLWSGWDVIDLKESDVAKTSPMGIRVKDKWYLHRTYKPGRNGWDIPNKYKD
Ga0214921_100433838F006885N/AMEYLLVIGLTLLSYWSIIKISNKRRMIFLNKNKYTQSSIYEMVKDVAPRQRFDKPKVITQSQKHIQKNMLRVVIAEGSAYWILNNVFYTANAINGRVDEETIQPLDIENMPMKELDKMLSILDDLKQGVGPNDSSSTGNKGI
Ga0214921_100433839F028423AGTAGGMENLEKNELIQLVGFYKQKLSDVELESLKLQLEVNKLNSMVLSLRQEPVKKTK
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Institute for Fundamental Biomedical Research
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