| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10019917 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7224 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (55.56%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F017134 | Metagenome / Metatranscriptome | 242 | Y |
| F021481 | Metagenome / Metatranscriptome | 218 | Y |
| F074872 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100199171 | F001125 | GGCGG | MGDRANFGFKDSKGDTIFLYGHWAGHGMLERLANAVSAAEPRWTDEAYATRICISRMVAEDWTQETGWGLSVNRILDNEHKIPVIDWASQTFTLFEEDLTTEVFSLSLDKFCTKYSQPVM |
| Ga0214921_1001991711 | F074872 | N/A | MSDPSATILTYTERKQMTIDNKTYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADNLA |
| Ga0214921_1001991713 | F002245 | AGG | MSNLMKVPHTIVFEAIIDLDKIPANLLPTLIALDENAITQMCKEATLHALGESNTLTVANENNTWAELTVKEGN |
| Ga0214921_1001991715 | F017134 | GGA | MELFTVACLNYEICGAEETFYDESEYEIYGDDYMCAECYASEEMEFYELTGWADSDALASAGFGMDEDY |
| Ga0214921_1001991718 | F011299 | N/A | ATAEILKYQSNKTHPALFSKLVNDFAEMFAKDNPRFDVKRFHEASGYHVPQFSS |
| Ga0214921_100199173 | F001043 | N/A | LKVIHQTTSQQDIQGDNMSDYKDGFDDGYKFAREELMEKLSEIDIMDIDSWILDRLSEMIEGGTL |
| Ga0214921_100199175 | F003422 | N/A | MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRQTTLVSVEHARIQPTNQTKEEKMEEATSMHDLPLSDSEKYNPDLLVTYKVLSGYSDPTYATDKVRNIEWELHNSRQNSKAVSTLQNKIGTVKDIISEAYADSDDQDTLRAIAEALDIPLVKEIEWSATIEVSGTITVDLLEGDVDVEQEIYDNLYVESQNGNVEVCDTEVTNVREN |
| Ga0214921_100199178 | F005741 | AGGA | MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFHGRVNAYVFDNQKKKKVTAMFLDESIANKLQTN |
| Ga0214921_100199179 | F021481 | AGGA | MSPILDTAKGHFYRKGDVFTTGKSGITGTIAEIISVRPTLTKLGLQTENGLRWAMVKIGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |