NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10018072

Scaffold Ga0214921_10018072


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10018072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7758
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F004010Metagenome / Metatranscriptome457Y
F007747Metagenome / Metatranscriptome345Y
F041081Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001807214F003304N/AMKQALVTQSFGDDWKKILDLTKPRMEEYCKRHSCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKADMVKLASAFGGIIEPQFYVNTGVFVVHTKGVGILSMPPIGLHPNHFAEQTWLNVMAHLWKIPLTELDPSFNCMTSVEGHFGLDRYKDAYIIHYAGQSNDMVKLAGQIKEDDAKLKEAGR
Ga0214921_1001807215F007747N/AMKLGKITFGKARPAPKQVLVDVTYDDKTGSELFRIGMKLLKKDREAVIEYVIKKSLAYAIKK
Ga0214921_1001807218F041081AGGAGGMIMEDVSVDFEFNGEKYTAYGNAEIDVMTEDIGPVGYREHYFAEVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0214921_1001807219F002009GAGGVRSMTAPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL
Ga0214921_100180725F002826GGAMEVESKARLKWGRDILLTARDKLAVERDRASHGHAIDIIRIIAMVDAAALIAKEVLEEE
Ga0214921_100180726F004010AGGAMLGKDVSKNMHELSMDNKKKGKARGAGGVPRSRNQMIAIALSAAGKSKPRKFKAKFGM
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