NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10010306

Scaffold Ga0214921_10010306


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10010306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11585
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F010227Metagenome / Metatranscriptome306Y
F016962Metagenome / Metatranscriptome243Y
F020159Metagenome / Metatranscriptome225Y
F042755Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001030614F020159AGGAGMMELILAFVAGMIVMDFMYAWRMGIPQMLWYRFKNRNNPQPNFEQDQS
Ga0214921_1001030619F042755AGGAGMFDSIVKVTLAIAVILLLLAIGPWLVIWSLNTMFPALAIEFTFWTWCAVVILGTFFRANVSVKRKD
Ga0214921_100103062F016962N/AMTELLIVAWVFGLLIGWSASKQVHLNGFRQLLRALKITEDDLLRAMVKIQSAEWQLEQAEGTEDRAVVDVKLEQQGTEIFAYRKSDNQFLAQGSNADSLIERLNQNLTPCKVVVAKEDGADLLQKNNS
Ga0214921_100103064F010227N/AMQATTFNVSDKLTLANTDTDTDSISTTYDCNVEVQLAGDSIWDCEIEAVTVTSIHIHETFDEDGDSSIHIAVCYNVDGDAEYEDSWRLYTDTGFADAISALLGTAVDFTEQGMQEDGYASME
Ga0214921_100103066F002052GGAMAVSREYQFVFNVVCAGNGKPDMARVEEMINLSMQDLVFDDEFIAALDEKESVTIQVNLV
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Institute for Fundamental Biomedical Research
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