NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006639

Scaffold Ga0214921_10006639


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006639 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15727
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F033005Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100066391F033005N/AMTRKLTEHDTQIYKQARAELLRDSPICHWCKRNTATELDHLVESDKGGTLEDGYVASCKSCNSARGATYRNKKLANAKQNREKAINDFLYSSQLP
Ga0214921_100066394F002421GAGGMKTCTICKEAIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTRPQQNEVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0214921_100066396F002794GGAGMSEGVAWNQGELSEETRRMVLEQAMQTNHTMAMFDLIDDIMAVKKNPHASIIQRLKGMKNSLSLEDPMPLYDVTTLDLAIKALQAHS
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