NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10005188

Scaffold Ga0214921_10005188


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10005188 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18559
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (65.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F008402Metagenome / Metatranscriptome334Y
F040099Metagenome / Metatranscriptome162Y
F047649Metagenome / Metatranscriptome149N
F074911Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000518813F047649N/AMRYYESRTYEHQCDFDEKNRAQKYLTEYREKYLHLRKEVRNLVREQNLTITPEFAKLIGL
Ga0214921_1000518821F074911GGAGGMILDEEILKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYD
Ga0214921_1000518838F008402AGGAGMAIEITSLVRIQKHTDFWYTVEDTHLDVGCDGCTISYWELPSGVNTSEKRVNQICMEKEEALAIADAIYKLFKKN
Ga0214921_1000518858F040099N/AMNYEVQTYDTTDDTVYYETVRDAMSCEDARDVIAEKYPNRKVIAVQGKNK
Ga0214921_1000518864F000919N/AMRFRNIEFRWSDLNKKYELVQWYKDCNHKEFCCVVAFFDKGKEGYDMRTVGDRFFEDKDAWVVGKYALEFLNAIFQIEKDEEELK
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Institute for Fundamental Biomedical Research
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