NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10003263

Scaffold Ga0214921_10003263


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10003263 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25055
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (63.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F006885Metagenome / Metatranscriptome362Y
F018928Metagenome / Metatranscriptome232Y
F028423Metagenome / Metatranscriptome191Y
F044481Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000326310F000264AGAAGMRMTMIFLRQKLTNNTMAAKLYTSEAWLRKRFVMDKKSPQDIAKECGTSVETIYVYLAKFGFRKSKR
Ga0214921_1000326319F044481AGGAMGKRRTQAELDGLLKFILGLTLGSILFFTTMGILYALVFVEQPLTGQSENDKMFFNVLGSVATFITGTLAGILIGQSGAKDIMDAQLSNKEMDSKNTLADKKLESEIDEAKARRLNKPDGAMPEEQPVDANWDK
Ga0214921_1000326339F028423AGGMQNLEKNELIQLVGFYKQKLSDVELESLKLQLEVNKLNSMVLNLSQGPVKKTK
Ga0214921_1000326340F006885N/AMEYLLVIGLTLLSYWSIIKISNKRRMIFLNKNKYRQSSIYEIVKDVVPKQRFDKPKVITQSQRHIQKNMLRVVIAEGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELDKMLSILDDLKQGAEPNDSGSTRNKGI
Ga0214921_1000326342F018928AGGAGMIIRSLNTMEKIINKNKNLLWLGWDVVDLKESDTAKTSPMGIRVKDKWYLHRIYKPGRNGWDIPNKYKD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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