NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10001943

Scaffold Ga0214921_10001943


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001943 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34582
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (78.95%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F032097Metagenome181Y
F043404Metagenome156Y
F051925Metagenome143Y
F082675Metagenome / Metatranscriptome113N
F093864Metagenome / Metatranscriptome106Y
F098314Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000194328F051925GAGMGRGFQFDFFAEEWSHTCGACSKELYAPTKKHMEGNFWLHTHSNDCLGGW
Ga0214921_1000194333F032097AGGAGGMEFNLHHDVDKGPLVRWVANQAMNISGWLAKVSSPYADMYTAVWDDYEDDELSVPHNQMGIFEDLEPFPQFEKLTEDLI
Ga0214921_1000194353F098314GGAGGMKKWIVDKFREMLNQTFTLLGMFIAWVVLTGSAKTVVGWAILWSIVVWLVSMNLREQKEKEGGE
Ga0214921_1000194366F007525GGAGMTNLTGVTVTYTEVIPTSKQMAEFYVWQEGYESYATITYLDRVVEIERNGEMHLTLPYFVNGELCDEGATHVRYSDDLEAAGINDDIQLMQFLKTISNSGFEIYRMNPWWEVFAHNQDMGEIYETLYEAVDGGIDYILDDRNW
Ga0214921_1000194368F082675AGGAMSKQYHWVVVYDEHWGAFMVDAESEFDRDKIMYDKETGRWEWLDPESEEETEYYRLEEILAYNLTRLDLTAERV
Ga0214921_1000194370F093864GGAGMYNYNVEFVLEAMVMITHVSFDEPDLSDEFIIEQARQNILSYYKIDPEVLYLQDVILHRG
Ga0214921_1000194372F016662GGAGMTYLVAVTEVVYDEEYLIKEMLATGEYGINAHPISHEAMVEFVKDREWQIEHNLFLTRYDVPVSIAIKDEDGTDLFFAKNKIEVK
Ga0214921_1000194373F043404AGGAMIDTDDKILQTLADDFVELHNVGGIELEQWETAYKFVKHFYHTEEMVQIIIREKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.