NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001552

Scaffold Ga0214921_10001552


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38822
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (87.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019798Metagenome / Metatranscriptome227N
F025224Metagenome / Metatranscriptome202Y
F028490Metagenome / Metatranscriptome191Y
F098904Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000155221F098904AGGAGMSNFLEAALGSLAGITVFYVLEALYYEVKARIRGKQYTDWLDELEEELQP
Ga0214921_1000155251F019798AGGMTTLVAIQGDGWSVLGCDSRLSDEHGRFQVSKTPKIVENNGVLIAGCGSSRASNVLHYGYTQPKPTVKEDLNTYMTQKFIPQMRKNFVDAGIDMKEDGDVAQNEGGFLVSIKGQVFSISDDYSWDTDVRNVYVMGSGGDVALGALAALGVEKVKTVNQAETMIRKAIAIAIQYDNMCSEPIHTFRQFK
Ga0214921_1000155252F028490AGGAGGMVSGGMRPGAPQNNPANVSGVGGAGQSGNYTGFAYGQNQAVNQQRIEGNQAVASTKPVIPESEAPYGGINFPELGTLFDPDPNPMEPMTTGVEGFRGAGPEALPKGFQNNTRPDENAMIAKQYLPDLVIAAQSKDAPDSFKRFVNYLMAQ
Ga0214921_1000155253F025224N/AMADVTFMPGSFFDNVDKFAASLGYQNAGIVFELALIPWKSIDDRDAFIMGVTGEDVKGGREYNYIKRDF
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