| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000630 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 63938 |
| Total Scaffold Genes | 93 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 72 (77.42%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F002935 | Metagenome | 519 | Y |
| F007115 | Metagenome / Metatranscriptome | 357 | Y |
| F011386 | Metagenome / Metatranscriptome | 291 | Y |
| F021757 | Metagenome | 217 | Y |
| F029107 | Metagenome / Metatranscriptome | 189 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000063014 | F002935 | AGGA | MRDRIKGYEGKIVDGKKLAEIANGIYALQYSNDFSKCTVDNLLFIELEEKNVYGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISIDTVKECLTDTVADIADYIRVFGDRLDNNCSLWQSKMSVAPATIAL |
| Ga0214921_1000063029 | F000808 | GGA | MEYFYSLTISYDGKLHDTYRFSDMLEAVRVWELCKDYGDAKEYATYNLSDPIGKMYTKTFYRNGEVAVK |
| Ga0214921_100006303 | F007115 | GGAG | MTRGFHLRASKEEKVALTIGKLLSDYSLDLEAVGKYLATSNSYVVYARALEVLEATEYNKQVAEYREIGKYYGNDIFK |
| Ga0214921_1000063032 | F021757 | AGGTGG | MTRKDYVAVAEILSSYKDLIGDEFTYHDLVDDFSAFFAEDNVNFKADKFFEACMISTY |
| Ga0214921_1000063044 | F011386 | GAGG | MKVTLTSMQGNTKDINLMSKKEVYDFIKLYKLTLLKNQRVKITCDLLGIDGYLQGVS |
| Ga0214921_1000063050 | F029107 | N/A | MTQHSLTTLSSSSATRLTPIGLHSGLDITIQNTDGSAYVYIGGEGVTTTNYGYRLAPGAAWSIELSGHDALYAITDTNGSKVAVLKTSLESGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |