| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10000441 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 77402 |
| Total Scaffold Genes | 94 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (34.04%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035218 | Metagenome / Metatranscriptome | 172 | Y |
| F038565 | Metagenome / Metatranscriptome | 165 | Y |
| F039478 | Metagenome / Metatranscriptome | 163 | Y |
| F043788 | Metagenome / Metatranscriptome | 155 | Y |
| F050171 | Metagenome / Metatranscriptome | 145 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1000044114 | F039478 | N/A | MLNPKGKRKMLKKILDFIDGVFEEEKEQPVLGTLYKIKGEVLPFRYIRFTNEIYSNKPVYHFKHHQLKEYKFNNLSRVERKANKEEVRIYNLIKEHVNEVAENNN |
| Ga0214921_100004416 | F050171 | N/A | MGMFNYIKVEQDLPLNEELKALNIDFKKEEYQTKELEDNAMITYIIRDYRLFELKVDGHWEDNPSYVKGETKFSEFFNKNRWVEDSREEVFRDDYTGTFTFGNYIYGETKESYDLFPDWKCVVVKGLLTEISLITPIEKHSSKDRIESDENFFKKMDDHKSKMKCPVYSFYFKYYVRTFEKIEWKLYNVINRIISFLNWLQWKGIKTLIKVLTPR |
| Ga0214921_1000044160 | F038565 | N/A | VTNKKKFKIPDSLLKQIDECSFGGYILFNFSSKGDPQVFTKFDNQINAMALLYYINTWSQSVDQLNLEATTDLIARKNEEDDNFDENKD |
| Ga0214921_1000044168 | F043788 | GAGG | MASLDDVYDMTQKLEDNNIDYLLITVTKGKKQGKADVFFSLKDKTSMKILATGLDVFNKEIDNIEREQEDDSDE |
| Ga0214921_1000044192 | F035218 | AGGA | MPLTKNPSNIDNFIFAAGRMKMYRVGIAGGYSKVTGTGGVAAFGNTAGMNINLNAGSSASGTSKVGYFDPTAAFMTASAGIIDYSKRIRFSIGGMMYIASTNSVIRIVFGGTGNSTDAPLAGVNGLTVKGFGAEFALQSSVIQARLIGYNGSYLTPTSYTTLTNGFGLVASDNRFFGVVIESDGAGNIFLYGADSQTNPAINIGQTPLLTLTGGPTNSTSSNRFGPEIQASNSSSAPSATPSAILQSTHWLLDVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |