NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233432_10022102

Scaffold Ga0233432_10022102


Overview

Basic Information
Taxon OID3300023109 Open in IMG/M
Scaffold IDGa0233432_10022102 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)4596
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F046022Metagenome152N
F087025Metagenome110N
F103915Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0233432_1002210211F030251GGGGGMLVTDSFPPVKEVTFPAQQREITLVKRTPFIGTPLWIVFERDGEAEPQQVARFTDFDLACDCFDSLVEDAKNES
Ga0233432_1002210212F046022GAGGMKVNRQILTARALQNIQTKTAAQRAVDPVDKTAKNLIWKQIFDAQLKGESDA
Ga0233432_100221026F103915GAGGMEQYKYGPLVYNTTDSDDDTGNYYWPGIAPVGYDDTGIPIDNRGYQCLDAQQCPLHPAFEVREINTEHNKALGCKIPTLESFNGWFEDAFIKAEPRDLAFFIIRWLNFQDDVHPATSALYSKYAQLDIDDIINALWPSLKAS
Ga0233432_100221029F087025AGGAMNIIDVHFINSGWGNDHGTRAADLVNLTIDPMGKPVATIKNPFDYYTAELIAVFLNDEWVCDLD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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