| Basic Information | |
|---|---|
| Taxon OID | 3300023109 Open in IMG/M |
| Scaffold ID | Ga0233432_10000018 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 121649 |
| Total Scaffold Genes | 181 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (18.23%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F024089 | Metagenome / Metatranscriptome | 207 | Y |
| F025258 | Metagenome / Metatranscriptome | 202 | Y |
| F042280 | Metagenome / Metatranscriptome | 158 | Y |
| F091851 | Metagenome | 107 | Y |
| F092065 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233432_10000018124 | F091851 | N/A | MKIYTYYQNINHNNQSELIDLWKISWSRQGYEPIVLNLQDAKRHSYFDTLNTEMRRIFKEITNKEISDYGMSCWFRWLAYATQADEKFYVSDYDAINVNFPITEPNDKLHLMDGGCPFLASGTPKQFENLCKAFVEASNQRIDILKQQTDHYHDQEFFQYNFMPQQNDSAEDLRKQHDILMTRNRHEIGGYIDPVENKILAGPNIGYIENENCKVVHVSHHSIGTLQEKYAQYKNLNASQLRIDLVKQFLGI |
| Ga0233432_10000018142 | F025258 | N/A | MSEYKPKPFTKEIHDKMREDINAPLDSKRTLCNVLKQGYRCSKEESYNLQAVQALLLEALWMGQRMHDKLYDDQKERVDQENIEQNQKEDPFAIDWSNLDGRNVAQGNWD |
| Ga0233432_10000018144 | F024089 | N/A | MNKLEDAMSNMSNIQDSLDTLIYAVGDAPRKYTEDELLNMLMGTSQLHQTCYDNLWMEYENFKREHQTFDEDDIFNQNSKTLKNK |
| Ga0233432_10000018153 | F092065 | N/A | MQEIIEKIYERMQFCADAQATSQQDEHNYILELTCLNEVLDQIETFPWGHFENECE |
| Ga0233432_10000018157 | F042280 | N/A | MKIKNKWDEEFEVSVGDYVGFKCDIEQIGRVKEIQRRGAMIVENKNGFDGDYIGGDTEALVGFDEIWHEG |
| Ga0233432_10000018167 | F007770 | GGA | MSGEGICVSFKRSKNTIDSNSNLLKKFQRIIYNSSVTKYMKWYGEEHSVELLEYGDTDQPRWRQEYVAIKDTFQFYISVYESWSEDADLYESHEREDSFVSLAMKFAQDNNLMYFPEGFPSEWIEQEIIDGEKHWNHFVVKPNDKNIDKICDLWREYGMFRVTIPRSDDSFVWSETKGKIKLLMEKT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |