| Basic Information | |
|---|---|
| Taxon OID | 3300023090 Open in IMG/M |
| Scaffold ID | Ga0224558_1002060 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19357 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000359 | Metagenome / Metatranscriptome | 1236 | Y |
| F011689 | Metagenome / Metatranscriptome | 288 | Y |
| F016565 | Metagenome / Metatranscriptome | 246 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224558_10020605 | F016565 | GAGG | MTAPASAIKDEVRLLIDVQIETLRQPAPITSSQLHEYRYRSEKLRTLCQELDRIGTRSVVDRKLERASSCAGGR |
| Ga0224558_10020608 | F000359 | GGAG | MSGQVVLYFEDQADALRFALAAGSVMAGDGTHATGDLVQGTTRVTRIRLDAANKGKGKQPNPNSNGRVA |
| Ga0224558_10020609 | F011689 | N/A | MLKVSVNRGVFVRAVCVLSVALVCVMGTVQATHSHSENSTTSRHACSICATAHAGLNTQTPASAPVLLTAVLAILVAEVSPIFRPVTTQFIRPPPAL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |