NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224554_1000078

Scaffold Ga0224554_1000078


Overview

Basic Information
Taxon OID3300023068 Open in IMG/M
Scaffold IDGa0224554_1000078 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89555
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (53.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003261Metagenome / Metatranscriptome497Y
F022249Metagenome / Metatranscriptome215Y
F050334Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0224554_100007815F003261GGAMRNSGKMSPTLFLIGADGPLMFVPASLVDADEKDAFANTARLVCIAHAATVSVMALEAWMKTATPGEKMDMTEPPSEAFDRQEVIVLMGESHGGQKQKFLPIIRSGNGKFFNLGETTVPGMDKMEGRFAQILPPKLATAEHRALAHAMLKVKGVNITKPGATVRLTPPRR
Ga0224554_100007860F022249AGAAGVPNYPGLLTASEFKAYNVAVPLVAVEVRLFNERATTLSEIEKQSTGTAEQVTSQVARDLPSLTVKGKPESEWKIRHVLMKSARSEMLLCSRDHEGEQQFGVVEKFDPKSPFARVHGDTDLQMTGDNAFVLLQNYVESERSVLQLFRKDIEATVEEKLSEKFPSQNHSRVVRAISARCETQAPVESEKEKPAKSVKIRM
Ga0224554_100007862F050334N/AVTEFLAIMGIGTVVAIWVVANLPKSRGYLRDAVSFEQKPLQTPAWRKDISEVYSTDGFDYLRKLDRYQTDPQHWPCPFPPPEPGKMECEYD
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