NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247774_1143876

Scaffold Ga0247774_1143876


Overview

Basic Information
Taxon OID3300022903 Open in IMG/M
Scaffold IDGa0247774_1143876 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006908Metagenome / Metatranscriptome362Y
F009690Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0247774_11438761F009690N/ADWRYNGLMPMVPAGHKTLVRYPDGTSKVITLYVRPAEGQVIAHGWEVRSVEAGEQDDAGGPTEYRISVARPASEGTSGTADPLDPR
Ga0247774_11438762F006908N/ALKLTHLFSTGGAYERAAAALRANELVDAHRLQERATVLTRRIKLESRAQQDADELRILGQTSREPDLGSDELGLSDRQTRRPPLGGPAAATSLGD

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