| Basic Information | |
|---|---|
| Taxon OID | 3300022891 Open in IMG/M |
| Scaffold ID | Ga0247770_1002124 Open in IMG/M |
| Source Dataset Name | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L136-409B-6 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12172 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005661 | Metagenome / Metatranscriptome | 393 | Y |
| F006886 | Metagenome / Metatranscriptome | 362 | Y |
| F069716 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247770_10021242 | F069716 | GGAG | MLSNINQPIVAGLLSASIAGIVAATALPFNDRIDYKIDNRIDSQPAWLVPPKAEFRSLERGYGGIKILLALLSTGGMFLTMLIARSEGEQEPVRQRIKQYKNRVYEFGYAAESAYQMSTTATRYKKLAEADEVAFEGEIEQAYMESLGIDPSVQQPLLTGTATLESISNPGDKVDPQANSPELPDQTVGPKMPVLTNYPSVLIYGAPGSNTVQLRLK |
| Ga0247770_10021243 | F006886 | N/A | MYSEFDSDFDYLNSETPQQFEQQNQAKAPEVTNIERFWMLTGNWGEFGSYFGVGLSASLIVRAIPALIPAWVILIPAAGLGLAVYSLAVDGAAKLRSQLILIAVGAALIAGNWDAWQAWIIANSQMLIFSFVVIVITIGFVAAQVWSKLNNAK |
| Ga0247770_10021244 | F005661 | N/A | MVHDAARTAKILDLQKQLRTAYNRHDAKIRANKVELERLTLEAIEGGLTDKAQIDKYVSKAIVAGAKHDQHIVNLSQQLQNELNLVKVQGASSQTLANADFRQRLLLIKANHQAKGQIQTNGFQQSLKAIQASPQQAITMQAKRAAFTNYINAKDFDPIPAVSGASTGSNNSSVGNNSKGFLDGLFDFFSGRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |