| Basic Information | |
|---|---|
| Taxon OID | 3300022872 Open in IMG/M |
| Scaffold ID | Ga0224526_1040687 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 950 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3529 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005296 | Metagenome | 405 | Y |
| F066360 | Metagenome | 126 | N |
| F082014 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224526_10406871 | F066360 | GGGGG | MILTPSNTGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRRKEMT |
| Ga0224526_10406872 | F005296 | GGAG | MAPWLLWFLPSFEAGFWSALIASKLRDRGKTRELLVYGSRSRTSLPLIDKRLRKAAGTPTKSQAFVAGRIAAGLRWLANTRAMDYAILLGLRRIWPKGQTISTEVNMCL |
| Ga0224526_10406873 | F082014 | N/A | DQSALEKALARIIETANGHRAKGLPKGSPAYIVLRETADAKIQVFSTKWSVDVAAVKAQAPALADLDSLCVPDTQIPAGLKLLVGLFGMIVSLVLLGVASGLVHAGHDWVMRFAGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |