NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224526_1000681

Scaffold Ga0224526_1000681


Overview

Basic Information
Taxon OID3300022872 Open in IMG/M
Scaffold IDGa0224526_1000681 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14495
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F007956Metagenome / Metatranscriptome341N
F012741Metagenome277Y
F069592Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0224526_10006811F007956N/AHREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAAAAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLLEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
Ga0224526_10006812F004581GGAGGMQHAEIYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLFNSVYGYPAGKQAVLAMSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLNATAAYSIERAGAHSRLVPPSTRHPVQLER
Ga0224526_10006817F012741AGGAGGMLTPQSRNPFGVLSMTNSSGGIFQSLKRQTAAAGFIAYAGIISAVLGLWMWLWRDTTLQNKTLTRTVGTVLVLSSFFFFQHLRRGFGAFFLILISTGIGIAVHYSNHPLIHGDRPEIPAIVLIAIGLIAYFAQTRYLSGFIFLLASSATIIGILWSYPAFFCPIVMVITGGVLILLGMMIRSLAMFNSFM
Ga0224526_10006818F069592AGGMNDNQSSHTVPLRLFAQNLVQRLEQLNNVDQFTDSSNLALPFALFQLCQINLSVTTSVEAEALLGGRSLPRCGRAASSATHPSGKETPQRPHSD
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