NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222665_1021114

Scaffold Ga0222665_1021114


Overview

Basic Information
Taxon OID3300022864 Open in IMG/M
Scaffold IDGa0222665_1021114 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #653
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1369
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007072Metagenome358Y
F077915Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222665_10211142F007072GGGGGMELSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTEDSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV
Ga0222665_10211144F077915N/ATSGLFELSKYIGISATAGLFWPVMLFVIWIVSFLGFKQYSTSRAWTFASFFCSILGIFLVVLNLMAPRWMYLCIFLTLIGLVWLKLEAQ

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