| Basic Information | |
|---|---|
| Taxon OID | 3300022843 Open in IMG/M |
| Scaffold ID | Ga0222631_1000134 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22939 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (21.05%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004461 | Metagenome / Metatranscriptome | 437 | Y |
| F006322 | Metagenome / Metatranscriptome | 376 | Y |
| F010877 | Metagenome / Metatranscriptome | 298 | Y |
| F027314 | Metagenome / Metatranscriptome | 195 | Y |
| F030556 | Metagenome / Metatranscriptome | 185 | Y |
| F084717 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222631_10001342 | F030556 | N/A | MADDKVFVGKTSIVTTKFGEIVKIALGPQDFEVLLNAKNEKGWVNLEMKDKRDGGKYLQLQGEYTGAKKPQAVNDTEDLPF |
| Ga0222631_100013422 | F010877 | N/A | MTTKNLLIGLAGSGIPSGELKAEMFKFHNSMVGKSIYFRKEESPNTACGSCIQRVKTSVWKWYHLDEKSPKYKGLIFMDKLGAHNIPMYRYIDGN |
| Ga0222631_100013423 | F006322 | N/A | MATKRDRSGTVIAGKGINLTDLQEQFLEGIRNEGMECAGKLSKDLNYTSFYRDRRNYGTAFYKELMKLANAEMSSIEAAKGTNLSALIRIRDNAIAGGDMKAAMESIRIINDMQGYRAATKIEQTKFDIKATIDLTAAVEENDSFLDIDFSEE |
| Ga0222631_100013426 | F084717 | N/A | VNDLTTIYELFKQFGDDHKMVNEFKLLNSLEDLENIEINHRGMFISLDNANISREDGSPVYDVDFSIVVVDKVATGNSLSLINSNQENLFIIGQLQDYLINNLSGEQNFQEVNLQGFSAEDYNITAAVCSATFLIGRKSSLMGIDF |
| Ga0222631_100013432 | F004461 | N/A | MSVTISNLPYGDRRPDLFIDAMVKSAAVLNRFRLVDGVKAKVNVPIFDAALTFGSDLCTFDPQSTASISEKEMTVATYKWAFLNCKNALESSYRGLLLKKGQNNPETMDSEFKDWVFDYFAKLSAEKALQLAGTELTTEMAADAAVLKYDTDAVLTSANILDKMEGAYEEMSDVMLSAVYGDADRDFKPVIFLGTAAMQYYQIAIAGLYTTTPQGIVDGAIPNYYGMEIAHFASMPPNEFMIAAPQNLVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGSEIVYAKNFA |
| Ga0222631_100013433 | F027314 | N/A | MACNITLADISYSCDDVAIGGIVALHVANRSDALTALGEDSATRSITTATAVTGISQISFNNKDGFSVFSEVKTVAADGVVSTVPTVSVELPKMTAAKITALNDISKGGAELVAFVETAAGTYHVVGMDYGLYAGTVDGNSGTGRSEKNRFQLTLTGDEQGLSYSITSALFATATA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |