NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222631_1000130

Scaffold Ga0222631_1000130


Overview

Basic Information
Taxon OID3300022843 Open in IMG/M
Scaffold IDGa0222631_1000130 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23287
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (58.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F028310Metagenome192Y
F043084Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0222631_100013024F000060AGGAMASKLNTEFNYRYQVIGDTAWEKIKTLKGFLEGRVRAAVLEEVGNLKYQAKLAKLNRLEKEAGLQEDILELKAEIMELESHQVAADEAFKLNKDEIVILNKLLKELFIIAEPTRIEGYTDEEMFEANAANEFTVNIGREIQAEMIANGRPSPAKLRNAMSNPYTWNALKSIGLIPKETKILEGNVNPTLKIALTGVEDEII
Ga0222631_100013029F043084N/AMDNYLQLHLTKTKEELIEIILNQEFEIEKLNNLNKFIKSKLTSSLEGNITVDPIVNKIIQKHLKRHREGMVNFGKTMDKNNKPFKHWVKEAQEESMDFIMYLEKTLNQG
Ga0222631_100013034F028310GGAMARKSIDDIYRDIEDQIEDDCFDREDLRLKNQEPYAIVGRSSGGNILLKVGDDLGFDVIKVLNFQQALELINELTVAVINKYAK
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