NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222632_1010522

Scaffold Ga0222632_1010522


Overview

Basic Information
Taxon OID3300022842 Open in IMG/M
Scaffold IDGa0222632_1010522 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F008154Metagenome338Y
F041486Metagenome / Metatranscriptome160Y
F096209Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222632_10105223F008154GGAGGMNKDKEVKDLNDCYQEFFRTVIDMQTRYNNQVIAGTMMAQALRLYKTNLTEEGFRSMVQTIADSGDNIQPFDVPTVN
Ga0222632_10105224F041486GGAMIISSIFGFFLTIVGINETAVAGYKIITTANNINGKTEKKEWKASLHEEAHQILKDVIREAGK
Ga0222632_10105226F096209GGAGMTTAIQTKSVQEIFEDMTESYSLGEYLDGHTNYGEDALMSADKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR
Ga0222632_10105227F000379AGGAGMKIDYTNKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTKADAMQVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDIGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGVAIESIREALEMEKA
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