NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222649_1016296

Scaffold Ga0222649_1016296


Overview

Basic Information
Taxon OID3300022839 Open in IMG/M
Scaffold IDGa0222649_1016296 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #337
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027379Metagenome194Y
F038108Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0222649_10162961F038108N/ALKPVYNLTNRFSSGGGGTTRTVATNVVITGKFILHFYNSGYKTTGGLGIFQLYAVPNAGGSNILIGSIRQYFNSTSFHLSFSQSNYVTNVAAGTYSLLLTRNTTTLYHDQNDFLTIIMEMVPF
Ga0222649_10162963F027379N/AMYILLIFNDQECRLLNAMWMYTTIKELIDDTKNVIKYSDVNKKTRVYKTAKSFFRVLKISSADTKLYFK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.