NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222649_1014693

Scaffold Ga0222649_1014693


Overview

Basic Information
Taxon OID3300022839 Open in IMG/M
Scaffold IDGa0222649_1014693 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #337
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012594Metagenome / Metatranscriptome279Y
F022152Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0222649_10146931F022152GAGGMSEQIPRSNTQQQLLLKLVGDMADVKAGFKMLQDHEDRIRELEKARWKNAWITAFASAALTAFAVTVVSQVLI
Ga0222649_10146932F012594AGGAGMAVTSTGITVGTAITEVSGQFLESKIVYLQSGTSGAVTYVGGSNVSASNGILLSETNNAVFQTNADDVLYCISNTPGAVVKVLEVK

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