NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222649_1004999

Scaffold Ga0222649_1004999


Overview

Basic Information
Taxon OID3300022839 Open in IMG/M
Scaffold IDGa0222649_1004999 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #337
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2465
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032551Metagenome179Y
F068498Metagenome124N
F102233Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0222649_10049991F102233N/AERDVWGQFNGLMASSFFVYLNELSKKQSMETEHRVKGLITDPSLQISTKGKDSISTTSYHRFCGSTNDEESMNTHKGDRRKLMVSASNELKGNFEYFNHLIKCIEDVNYIKSFYEYLKSIPDLDKFNNIPIPMTEYQSILCELSITPIEAFVRDMIQDTPADIHELVLDSNELFDLFKGYLQKSNTKYEINLIKFGVRLTNLKLDGISKEKGRTCNKKRFDVELLKKHFMMGCQITI
Ga0222649_10049992F068498AGGAMILLMREYQKKHKIKKECVTNCQYFYDNFKANCPLNTIKVKAVIGISLNSDRTIIYEGHVVVEVDEKFIFEPSYEVYSTDNIEYFDNIKQFMNKYKLPNKNDMKDIIKEFIDFTKIADTINNGGLHITDNEYYNNQADYVEEKIKPFL
Ga0222649_10049993F032551N/AMPYTNCLRLSTIKYLDLLDDVPYKIIKIMINEDDEDNDDETYNVEITDLECDRVCYCKTQFKLTLPVNISKGTLPLYVDKTFTTVIEYNTSSGVASTILDLQY
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Institute for Fundamental Biomedical Research
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