NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1013881

Scaffold Ga0222711_1013881


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1013881 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1183
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → Pelagibacter virus HTVC019P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001702Metagenome649Y
F009178Metagenome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10138813F009178AGGMTIDKNLEGAWRICENINGYLETQVYYFYTKKDAIRKFRQYKKNIINK
Ga0222711_10138814F001702N/AMNKEQKQIKKRIDQAYSKLHVLSNITWTPYRDEIFDMNKKDEKRHRFNRPSSDFEASINDIAKMFTVKNIAESLLNIEKWKVKDLINIRKSALYSQSVVENYKDKILDAWKDEDLKYLANLDYIALIDWKHYTEIEQRKVA

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