NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1010470

Scaffold Ga0222711_1010470


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1010470 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1468
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020325Metagenome / Metatranscriptome224Y
F024964Metagenome203Y
F057145Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10104701F024964AGAAGGMIDMKDMSDKLYWTKGKEVGAERERNRISVIAQARICFDFHYRGECEHSVCYGMAELVVTIAEAQND
Ga0222711_10104704F020325N/ALTKWEKMLIRNWADLKYEVADKLFGKELDEAYKMGMRIGSEYATRRLSFEVSLKRNLTLTKTEERGYNHAIAAVARIKPEIASKTGASV
Ga0222711_10104706F057145GAGLGCRMSANTRLLRTAAESALDALELISFTEGFEAATNALDELSDIKHNFDEQQVAEILRWAAKELRGENA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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