NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1004183

Scaffold Ga0222711_1004183


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1004183 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2906
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003357Metagenome / Metatranscriptome492N
F025595Metagenome / Metatranscriptome201N
F076488Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10041836F003357AGGAGGMKRNSWIVKQMFADAKNNLGWVFKGVLVAGGFVAGIKILTFLNMPKEIVFPVMWIAFIVLMAYKWYSMKYDWSKEDKAYDRASKKYTNKLKELK
Ga0222711_10041837F076488AGGAGMRTEYDEVKEILVKHDVDLDGDIDYMMETIVYGEPLFQELYEYFMGDMPYDVAKGRGDVMSDEWILDRVQALGLIKEEQNDPNGLPLNFTNRYHQEEA
Ga0222711_10041838F025595AGGAGGMTIDINGLSTKLEVLTSIKENIQDGDTDTAIDMVNQMIELEPAPGQRRPVADALD
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