NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1002937

Scaffold Ga0222711_1002937


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1002937 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3713
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003224Metagenome / Metatranscriptome499N
F037978Metagenome167N
F038569Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10029372F038569N/AMWTRSKQSRLRRSQRHRSTLSWRRKPNALGLLSEPNSKVRIVDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLADVSSKVDRIIEKLGL
Ga0222711_10029377F037978N/AMGQRQGGRSLEPDTPRVLNASYYLFDLDHLGLDGQAFIVIRDGKPTLAYRRFKRDRWSPEIMPNTPES
Ga0222711_10029378F003224GGCGGVGSLANTLATSKKGEQMNEALFDSIGDIQLDRPGHNCTGQLCTYCERFDREDVQVLAEIDKNWRIQATIFRKSLAIGGLFTADLLIEAIGLPDGHPNQIGALFRSWSSMGVITSMGNYVVSTRESNNGRSIRMWKRTA
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