NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1002273

Scaffold Ga0222711_1002273


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1002273 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4470
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003224Metagenome / Metatranscriptome499N
F037978Metagenome167N
F038569Metagenome165N
F070640Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_10022731F038569N/AHRSTLKRLPKPNAHGQSSEPNLKGRPVDFGDIVGLIATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVASKVDRISEKLGL
Ga0222711_100227311F070640AGGAMTHEPIHYSKYDSHCGLAGCGCDHARCYKGWIDNTAGTWPCLYCRDNLTGRLMRADQARAKGYPQASISRIMMDTTR
Ga0222711_10022736F037978AGGVLNASYYLFDLDHLGLDGQAFIVIRDGKPTFAYRRFSRDRWSPEIMPNTPE
Ga0222711_10022738F003224GGAGGMTYSLFDSIGDIQLDRPGHNCTGQLCTYCERFDREDVQVLAEIDKSWRIQATIFRKSLAIGGLFSADLLIEAIGLPDGHPNQIGALFRSWSSMGVITSMGNYVVSTRESNNGRSIRMWKRTA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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