| Basic Information | |
|---|---|
| Taxon OID | 3300022837 Open in IMG/M |
| Scaffold ID | Ga0222711_1001862 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #1699 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5139 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001656 | Metagenome / Metatranscriptome | 656 | Y |
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222711_10018622 | F001656 | AGGAG | MAYSQTASAGGQNGSADLTRRQSFNGKGLTFIEVIFDDAITASATTPEALDSVFDKTTKVVNKNGTLLGASYRLAVKATDNDASEVAAINADDSIDSYQYVVEGTPGQFNAADSAGDINMDVDATVVADAEADLESDILASLDVSDSAGNVHVKIRTLLPEGHVNGDASTFVGMFDQRGD |
| Ga0222711_10018624 | F002093 | AGGAGG | MAYDNTLPAGGPSNFISPNLAHEGEGVAVDFITVDYISDVSGEVTHPYASAATAGIKLSMDAIQNLGVNILGNGVLSNSDTEQTYMVRRDSLDTISSTTTIAAIQAAIRLLNAGTPDKVTATISSATAGDRDMGDTSIGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |