NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222711_1000957

Scaffold Ga0222711_1000957


Overview

Basic Information
Taxon OID3300022837 Open in IMG/M
Scaffold IDGa0222711_1000957 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7824
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003357Metagenome / Metatranscriptome492N
F025595Metagenome / Metatranscriptome201N
F036785Metagenome / Metatranscriptome169Y
F060352Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0222711_100095712F060352GGAGGMKKVSKLKKDSVFICSVCSDGFVHKKPETLVGKLGPIPVQFCRPCFKRVMKHDHLELNDSRRMMA
Ga0222711_10009572F036785GGAGMKTDKINMIINFSILALLIYLAVAVKSLQKQVSWAPTIIKPMGMNSEMSHDIQTLLNNVLREAINQTGEQ
Ga0222711_10009577F003357AGGAGGMTRNSWIVKQMFTDAKDNLGWVFKGVLVAGGFVAGIKILTFFNMPKEIVFPVMWIAFILLMAYKWYSMKYDWSKQDKDYDKASKKYANKLKELK
Ga0222711_10009579F025595AGCAGGMDINGLSSKFDILTSIKENIQDGDTDTAIDMVNQMIELEPQPEQSRPVADALDHHQIMQKGIVR
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