NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222654_1003228

Scaffold Ga0222654_1003228


Overview

Basic Information
Taxon OID3300022836 Open in IMG/M
Scaffold IDGa0222654_1003228 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4973
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030897Metagenome / Metatranscriptome184N
F033012Metagenome178N
F094426Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0222654_10032284F030897N/AMQVEAGVLHLEYKGLEVEAPVTWDLVQGGPIYALKNGKIFLSLTAEELKALFVLYRDLELKGTVENA
Ga0222654_10032287F033012N/AMQTATVTASQPTGQWQELFKFEVTLSDGATGTVFGKTPQLRFAIGEEVEYEIPKEGRLKLSKPGSGASYGSNTAGAATSYSAAPKRDYSKQSALQSACTFLNGSKATKEQVVFLADYFANWLKGPEAAPVQVQQASFSEMPVTAPPSAPVVAQAPAPAANNIWEQEDGLPF
Ga0222654_10032288F094426N/AMFLTNYTADKVRLAYTFAEHLRHNWRMLDDGKKDELINEITSLLNVDFIETRIESKLDKIESDGKYKTPRRPKLGQ
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