NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222654_1002319

Scaffold Ga0222654_1002319


Overview

Basic Information
Taxon OID3300022836 Open in IMG/M
Scaffold IDGa0222654_1002319 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6454
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F014160Metagenome / Metatranscriptome265N
F025069Metagenome / Metatranscriptome203N
F025529Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0222654_100231914F025069GGAMTLGLWGMSMANTITSFDIASASSIAQLVLSILGIVYLGVKIVNETLNGRVEREGKRIANEINNRELDEEL
Ga0222654_100231915F000751N/AGKDYLLNLGVIIEVENEIVFAKNTAAVVYIGKVVKIPATYDDEGNIITPAIFYDGYAIDVMSSELLDFGTYEVYPADKAAHSFYGWARDAEVPKTQE
Ga0222654_10023195F014160N/AMKTLKDSIQELAAPFIDWESDHDNEVLQQDFVEARLGEYGVEFSIYASRDVSYSHGTHFETEDVTLGDSHFNIEILAVFDQHFDDIEITDEEEDLLINVIANHYE
Ga0222654_10023198F025529N/AMQGSKEYFLRVKEAEYFDLPQALRERSVVYYNDYELYKDDPSFKALNKAYRDAKKALENWKYDQRHG
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