| Basic Information | |
|---|---|
| Taxon OID | 3300022836 Open in IMG/M |
| Scaffold ID | Ga0222654_1000499 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #421 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25631 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (5.41%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000751 | Metagenome / Metatranscriptome | 907 | Y |
| F010694 | Metagenome / Metatranscriptome | 300 | N |
| F015230 | Metagenome | 256 | N |
| F032718 | Metagenome / Metatranscriptome | 179 | N |
| F052036 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222654_100049914 | F010694 | N/A | MSIPVIFDNPHEFFEEATNQNYTDAHDLFYRSMVEYLLDESIQYVCTFIYNEYDKYHFEPLCDDDEQILSRDALLYFEYIEEYESCQLIFEVLNVED |
| Ga0222654_100049916 | F052036 | N/A | MELKTALNRLFDKDLDLNSKQQHILITIIGAHSRHEFKAGLQAAKELKKTLDF |
| Ga0222654_100049923 | F032718 | N/A | MIRALSPYYIDTPLVYGVTTCDKYTLNVWVWNGDKSTPDSTNSYQITYENTAASTGTHSININAIIQDYIEFKEPSPSLVAGVQVIDGDNQQWVYTFVTYDAVATVEHEATDIMTLGYAYGNEGRNVTAVTDNTLLIPQQYKVNIQGSFVFPIYVPITITTAESITVKSYPALNINYSATPAQSDLSDEVVKYLWIDISVATNESYIEIIWNGKTTTLDITNECRYTPLDTFFQNKDGALQSFTLFKKQEESINVTDSSFETNRGQASDGFHQFVRYGVQARTTLTAETGWLDEDMNEIVKQILLTERIWSFASGVYTPLNLKMTSQKFKTRQNDRLINYTMTFEKSYNEINNI |
| Ga0222654_100049937 | F000751 | N/A | MMQIYKTNFPTEQQGKDYLLNLGVIIEVENEIVFAKNTAAVVYIGKVVKIPATYDADGNILTPAVFYSGFAIDVMSSDILDFGTFEVFPADKAAHSFYGWARGAE |
| Ga0222654_10004997 | F015230 | N/A | MNDSGDITAKFTASEQAIDKLQQPTIEIERTRNAIRETEKRNEGVRAELEAIQKRIKKGYKAIRESSDEQQRIAEAQKEISRLGGLIAWQDNRSKQADTIIERGY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |