NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222641_1001093

Scaffold Ga0222641_1001093


Overview

Basic Information
Taxon OID3300022828 Open in IMG/M
Scaffold IDGa0222641_1001093 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #227
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3995
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028979Metagenome189N
F051791Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0222641_10010932F028979N/AMNYKMNCEFCEKKLSESYFTDDVYMTKVNECGQTIDAGKKELYFCNYECACKRHEHYTVKEKMKLIKKSKKNAEDLEEIYKDGDTTLLILMNYYKAIIHFIRGKITEEKFKIIAQKAMEVGEEMGDSVYLSIVRDTQYALLFMNPKYN
Ga0222641_10010937F051791N/AMTYTLDTPYSNQVIFLNSQNSVLKTIDGVGQYQYNFQTPIQLPINCEMLISVTDAQIPNIFPNVGSTNNKISFSVPTFSMFFTITIQDPDGTTDRAYNVNEWLAFVNEQIYIESSGRFSLYGSFQSTMSKIQWFSNFAFQIIDTPNYRTTCYDLIGFKKDTQNQIIYESNEILLSSIVNPAFHITMPSSVNFAGTRFIFVKFNNISVNNLNSNGITDNAMV
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