NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_100425

Scaffold Ga0222646_100425


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_100425 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12258
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014810Metagenome260Y
F037467Metagenome168Y
F060412Metagenome133N
F104107Metagenome101N
F104108Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0222646_10042512F014810N/AMSIFSDNAGVIFTAITGAISSVFLFFKGKKSRESNANIEIGKAYELMAKQNNAFILSMTDKIDKQTKKIEDLEFEVIGLRNENKLLLGQLKKYRK
Ga0222646_10042517F037467N/AMNFIKELQSVLLLGLKTNVDAESINLENKLKADPNSITSSELRKLFYHAGIKSVTIGNTTINI
Ga0222646_10042519F060412N/AMEVIREKIDVQLIFETYKVKMNDPNIKYGYFCIHVLCTSLTLVNGWKNSTHQMSSHKKAKVLSITGLLPDQYTKIITLNI
Ga0222646_10042522F104108N/AMKDLTVENFENLNFAQDFSKKNAKKQGLELARSILDNGNVNPLEVMATLVRLSEVINTFQTELKAN
Ga0222646_1004258F104107N/AMLQTIGLKRILDMKVTENTTVLSIFTQNVSGLYDIKVTNETSKAQTYSKTKSLTVEKYYFQITDVDGFNFTNENTYIIEVFVQNTADLVYRNNAYCTDSSSYNTEKRINSDNQYITL
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Institute for Fundamental Biomedical Research
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