NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222646_100149

Scaffold Ga0222646_100149


Overview

Basic Information
Taxon OID3300022822 Open in IMG/M
Scaffold IDGa0222646_100149 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22559
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015332Metagenome / Metatranscriptome255Y
F076093Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0222646_10014914F076093AGGAMAWYYTFNPLVVPEGLLHTKPGITNSFPLGRLGKYQLPYGPFWEASYTWLCYHEDPAVIKWIEDSVLGHFRHRCCTLGAGMTEWLMLTSWQDVRDYVLLICNGTGITIIDYGPGPWTAVRIQAELQSN
Ga0222646_10014940F015332AGGAGMFTADQVWGLAVAADRVNGGYFKEDVYVMENQCTKRITQANKMMLKEWLRTDAVTEATAADIERGREVRHFFNGFLLKQLSGKINEFEQQALRIAQMDEFTGRNLLEFAIVSCLPAAMVREQERKDLTSDIRNSTQLTGNVGDKIQGEVEVVKCYYSKDYDKYRVTAKLVDSFVDFWYNSNLEAGTKICIKAKIKSVRGDNTTQLNFVKRA
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