NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222673_1004022

Scaffold Ga0222673_1004022


Overview

Basic Information
Taxon OID3300022821 Open in IMG/M
Scaffold IDGa0222673_1004022 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #801
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3555
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003482Metagenome / Metatranscriptome484Y
F012963Metagenome / Metatranscriptome275Y
F016592Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0222673_10040221F012963N/ATEDGTSPTLASNIGSFITAIEMETGLSDGRSQRLYSGISTISSTVNYRGVYANTSVAAQVDFFAQFTLLLSLNSRGTNVWSTSV
Ga0222673_10040223F003482N/AMDESDILSLKQQEEFKTIIHNTKNLIKRDTGNIPSADELNDANKGLWVEHDPDNFNKMFDGLLDYCADEEYYDNLDWNSVNYEVYGADYYEENFPGFPDEVYEILAKSTKEENKVIDNRIPPLKITEGEFIVKFD
Ga0222673_10040227F016592N/AMSIKIISGHSIFNENAIVLSQKFKWKLETDFDPQPNDLYIVYGAHELAHQLLEVQFRKNNSFGYIIMNSEQTESQFFKNKYYISLMKRNIVFDYNTLTT
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