NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222673_1000606

Scaffold Ga0222673_1000606


Overview

Basic Information
Taxon OID3300022821 Open in IMG/M
Scaffold IDGa0222673_1000606 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #801
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15179
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019027Metagenome232Y
F029154Metagenome / Metatranscriptome189N
F080516Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0222673_100060616F019027GGAGGMSGATAAEFKKWEDHAKSLDVNALLHVIEDCRNAREAMKGWNPVKENYYADQGMTYSDELRRRIK
Ga0222673_100060619F029154AGGAMELLKIHGLITNITQHYSAFAVDAEGQNTFITNNLARFLQLSVGDQVLMDVVPNHPDKAETIPYRAVGCVKIKECGPTARISQDEPETDNGVLDQLLNEWTEQKQSPQEIMETIKFLLKAADTYLITSEVIAAYREEQPDQKDVSDKDINNACHRLFKQSKIARAEVWAKPDQSKCSYNLWAFDASRFTL
Ga0222673_100060620F080516N/AMSLERIEELGQILSKLDLTIQHMLSCKITPDDFPDLNDALKMLEEARKMLRETYQNVRTDYDRN
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