NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222673_1000486

Scaffold Ga0222673_1000486


Overview

Basic Information
Taxon OID3300022821 Open in IMG/M
Scaffold IDGa0222673_1000486 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #801
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17778
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (81.58%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001086Metagenome / Metatranscriptome782Y
F013572Metagenome / Metatranscriptome270N
F016059Metagenome250Y
F019662Metagenome228Y
F064100Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0222673_100048611F016059AGGAMPKYNITAGQTIYATYEIKVEASCKEVAEKVALATPLDKWDDECFENGDALTVDEIEEE
Ga0222673_100048612F001086AGGAGGMTDKCVAWAIIATIERPDGTWYDETIGAIDDTTAQYVDDFLTEYMKDKEESKHE
Ga0222673_100048613F019662AGGAGMNKKDREDFEWASSFYLYDDLDKAWVNWDEEKLFEEIESLAWQPFEHWEGEDIYNEINKLASSVRQKIEKENK
Ga0222673_100048614F064100N/AMRVSKRKIKKFLTLNLYKNKDYYNKELELAIEVIQDFLNCDPVHVGKLQSNTFTTVYEIDGEEVE
Ga0222673_100048627F013572AGGAMNTPLLDKELWEEYGNDEQEEAYDMLQSLKSQHNGDPTMLYINENEELQSYLMWFARTENLTCEITEGVTRVC
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