NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10287433

Scaffold Ga0214917_10287433


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10287433 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008132Metagenome / Metatranscriptome338Y
F038479Metagenome / Metatranscriptome166Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_102874331F038479AGGAMTSLTLEQKISKAAHLLAEGKVVSFRGASFDTYMKVERLANRIKQEREFPQCPCGECD
Ga0214917_102874332F087194AGGMTLDEYKQMVEAQRLASLAIALEALTKSQAIAKEMNK
Ga0214917_102874333F008132AGGAGMTKWDTIQADVSDAYRHWDDVVDVENDEDDFFGFAKAIEIDHLTDEQLDEIGKMFEXL

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